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Hi,
I would love to see a repository of my the plugins I use regularly for my clients with an option to save the product keys.
For example when I do a fresh install for a new website I have a standard suite of plugins and themes I install when I get to work based upon the type of site I am setting up.
It would be an awesome addition to the setup process which could even prepare standard templates for different types of WordPress based website. You already have the skeleton for it with the automated WPMUDEV suite install.
This might also give you information to improve f.e. Hummingbird based on the meta-data you receive.